MueLu_AggregationPhase2aAlgorithm_def.hpp

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#ifndef MUELU_AGGREGATIONPHASE2AALGORITHM_DEF_HPP_
#define MUELU_AGGREGATIONPHASE2AALGORITHM_DEF_HPP_
 
 
#include <Teuchos_Comm.hpp>
#include <Teuchos_CommHelpers.hpp>
 
#include <Xpetra_Vector.hpp>
 
#include "MueLu_AggregationPhase2aAlgorithm_decl.hpp"
 
#include "MueLu_GraphBase.hpp"
#include "MueLu_Aggregates.hpp"
#include "MueLu_Exceptions.hpp"
#include "MueLu_Monitor.hpp"
 
namespace MueLu {
 
  template <class LocalOrdinal, class GlobalOrdinal, class Node>
  void AggregationPhase2aAlgorithm<LocalOrdinal, GlobalOrdinal, Node>::BuildAggregates(const ParameterList& params, const GraphBase& graph, Aggregates& aggregates, std::vector<unsigned>& aggStat, LO& numNonAggregatedNodes) const {
    Monitor m(*this, "BuildAggregates");
 
    int minNodesPerAggregate = params.get<int>("aggregation: min agg size");
    int maxNodesPerAggregate = params.get<int>("aggregation: max agg size");
 
    const LO  numRows = graph.GetNodeNumVertices();
    const int myRank  = graph.GetComm()->getRank();
 
    ArrayRCP<LO> vertex2AggId = aggregates.GetVertex2AggId()->getDataNonConst(0);
    ArrayRCP<LO> procWinner   = aggregates.GetProcWinner()  ->getDataNonConst(0);
 
    LO numLocalAggregates = aggregates.GetNumAggregates();
 
    LO numLocalNodes      = procWinner.size();
    LO numLocalAggregated = numLocalNodes - numNonAggregatedNodes;
 
    const double aggFactor = 0.5;
    double       factor    = as<double>(numLocalAggregated)/(numLocalNodes+1);
    factor = pow(factor, aggFactor);
 
    int              aggIndex = -1;
    size_t           aggSize  =  0;
    std::vector<int> aggList(graph.getNodeMaxNumRowEntries());
 
    for (LO rootCandidate = 0; rootCandidate < numRows; rootCandidate++) {
      if (aggStat[rootCandidate] != READY)
        continue;
 
      aggSize = 0;
 
      ArrayView<const LocalOrdinal> neighOfINode = graph.getNeighborVertices(rootCandidate);
 
      LO numNeighbors = 0;
      for (int j = 0; j < neighOfINode.size(); j++) {
        LO neigh = neighOfINode[j];
 
        if (neigh != rootCandidate) {
          if (graph.isLocalNeighborVertex(neigh) && aggStat[neigh] == READY) {
            // If aggregate size does not exceed max size, add node to the tentative aggregate
            // NOTE: We do not exit the loop over all neighbours since we have still
            //       to count all aggregated neighbour nodes for the aggregation criteria
            // NOTE: We check here for the maximum aggregation size. If we would do it below
            //       with all the other check too big aggregates would not be accepted at all.
            if (aggSize < as<size_t>(maxNodesPerAggregate))
              aggList[aggSize++] = neigh;
          }
 
          numNeighbors++;
        }
      }
 
      // NOTE: ML uses a hardcoded value 3 instead of MinNodesPerAggregate
      if (aggSize > as<size_t>(minNodesPerAggregate) &&
          aggSize > factor*numNeighbors) {
        // Accept new aggregate
        // rootCandidate becomes the root of the newly formed aggregate
        aggregates.SetIsRoot(rootCandidate);
        aggIndex = numLocalAggregates++;
 
        for (size_t k = 0; k < aggSize; k++) {
          aggStat     [aggList[k]] = AGGREGATED;
          vertex2AggId[aggList[k]] = aggIndex;
          procWinner  [aggList[k]] = myRank;
        }
 
        numNonAggregatedNodes -= aggSize;
      }
    }
 
    // update aggregate object
    aggregates.SetNumAggregates(numLocalAggregates);
  }
 
} // end namespace
 
#endif /* MUELU_AGGREGATIONPHASE2AALGORITHM_DEF_HPP_ */