16 #ifndef dealii_trilinos_sparse_matrix_h
17 # define dealii_trilinos_sparse_matrix_h
20 # include <deal.II/base/config.h>
22 # ifdef DEAL_II_WITH_TRILINOS
24 # include <deal.II/base/index_set.h>
25 # include <deal.II/base/subscriptor.h>
27 # include <deal.II/lac/exceptions.h>
28 # include <deal.II/lac/full_matrix.h>
29 # include <deal.II/lac/trilinos_epetra_vector.h>
30 # include <deal.II/lac/trilinos_tpetra_vector.h>
31 # include <deal.II/lac/trilinos_vector.h>
32 # include <deal.II/lac/vector_memory.h>
33 # include <deal.II/lac/vector_operation.h>
35 # include <Epetra_Comm.h>
36 # include <Epetra_CrsGraph.h>
37 # include <Epetra_Export.h>
38 # include <Epetra_FECrsMatrix.h>
39 # include <Epetra_Map.h>
40 # include <Epetra_MultiVector.h>
41 # include <Epetra_Operator.h>
45 # include <type_traits>
47 # ifdef DEAL_II_WITH_MPI
48 # include <Epetra_MpiComm.h>
51 # include <Epetra_SerialComm.h>
54 DEAL_II_NAMESPACE_OPEN
57 template <
typename MatrixType>
60 template <
typename number>
79 template <
bool Constness>
94 <<
"You tried to access row " << arg1
95 <<
" of a distributed sparsity pattern, "
96 <<
" but only rows " << arg2 <<
" through " << arg3
97 <<
" are stored locally and can be accessed.");
198 template <
bool Constess>
237 template <
bool Other>
271 operator TrilinosScalar()
const;
277 operator=(
const TrilinosScalar n)
const;
283 operator+=(
const TrilinosScalar n)
const;
289 operator-=(
const TrilinosScalar n)
const;
295 operator*=(
const TrilinosScalar n)
const;
301 operator/=(
const TrilinosScalar n)
const;
339 friend class Reference;
356 template <
bool Constness>
380 template <
bool Other>
438 <<
"Attempt to access element " << arg2 <<
" of row "
439 << arg1 <<
" which doesn't have that many elements.");
447 template <
bool Other>
528 <<
"You tried to access row " << arg1
529 <<
" of a non-contiguous locally owned row set."
530 <<
" The row " << arg1
531 <<
" is not stored locally and can't be accessed.");
582 const unsigned int n_max_entries_per_row);
593 const std::vector<unsigned int> &n_entries_per_row);
637 template <
typename SparsityPatternType>
639 reinit(
const SparsityPatternType &sparsity_pattern);
687 template <
typename number>
689 reinit(const ::SparseMatrix<number> &dealii_sparse_matrix,
690 const double drop_tolerance = 1e-13,
691 const bool copy_values =
true,
692 const ::SparsityPattern * use_this_sparsity =
nullptr);
700 reinit(
const Epetra_CrsMatrix &input_matrix,
const bool copy_values =
true);
722 const size_type n_max_entries_per_row = 0);
735 const std::vector<unsigned int> &n_entries_per_row);
756 SparseMatrix(
const Epetra_Map &row_parallel_partitioning,
757 const Epetra_Map &col_parallel_partitioning,
758 const size_type n_max_entries_per_row = 0);
777 SparseMatrix(
const Epetra_Map & row_parallel_partitioning,
778 const Epetra_Map & col_parallel_partitioning,
779 const std::vector<unsigned int> &n_entries_per_row);
807 template <
typename SparsityPatternType>
808 DEAL_II_DEPRECATED
void
809 reinit(
const Epetra_Map & parallel_partitioning,
810 const SparsityPatternType &sparsity_pattern,
811 const bool exchange_data =
false);
827 template <
typename SparsityPatternType>
828 DEAL_II_DEPRECATED
void
829 reinit(
const Epetra_Map & row_parallel_partitioning,
830 const Epetra_Map & col_parallel_partitioning,
831 const SparsityPatternType &sparsity_pattern,
832 const bool exchange_data =
false);
852 template <
typename number>
853 DEAL_II_DEPRECATED
void
854 reinit(
const Epetra_Map & parallel_partitioning,
855 const ::SparseMatrix<number> &dealii_sparse_matrix,
856 const double drop_tolerance = 1e-13,
857 const bool copy_values =
true,
858 const ::SparsityPattern * use_this_sparsity =
nullptr);
875 template <
typename number>
876 DEAL_II_DEPRECATED
void
877 reinit(
const Epetra_Map & row_parallel_partitioning,
878 const Epetra_Map & col_parallel_partitioning,
879 const ::SparseMatrix<number> &dealii_sparse_matrix,
880 const double drop_tolerance = 1e-13,
881 const bool copy_values =
true,
882 const ::SparsityPattern * use_this_sparsity =
nullptr);
901 const MPI_Comm & communicator = MPI_COMM_WORLD,
902 const unsigned int n_max_entries_per_row = 0);
912 const MPI_Comm & communicator,
913 const std::vector<unsigned int> &n_entries_per_row);
930 const IndexSet &col_parallel_partitioning,
931 const MPI_Comm &communicator = MPI_COMM_WORLD,
932 const size_type n_max_entries_per_row = 0);
949 const IndexSet & col_parallel_partitioning,
950 const MPI_Comm & communicator,
951 const std::vector<unsigned int> &n_entries_per_row);
973 template <
typename SparsityPatternType>
976 const SparsityPatternType &sparsity_pattern,
977 const MPI_Comm & communicator = MPI_COMM_WORLD,
978 const bool exchange_data =
false);
992 template <
typename SparsityPatternType>
995 const IndexSet & col_parallel_partitioning,
996 const SparsityPatternType &sparsity_pattern,
997 const MPI_Comm & communicator = MPI_COMM_WORLD,
998 const bool exchange_data =
false);
1016 template <
typename number>
1019 const ::SparseMatrix<number> &dealii_sparse_matrix,
1020 const MPI_Comm & communicator = MPI_COMM_WORLD,
1021 const double drop_tolerance = 1e-13,
1022 const bool copy_values =
true,
1023 const ::SparsityPattern * use_this_sparsity =
nullptr);
1038 template <
typename number>
1041 const IndexSet & col_parallel_partitioning,
1042 const ::SparseMatrix<number> &dealii_sparse_matrix,
1043 const MPI_Comm & communicator = MPI_COMM_WORLD,
1044 const double drop_tolerance = 1e-13,
1045 const bool copy_values =
true,
1046 const ::SparsityPattern * use_this_sparsity =
nullptr);
1084 std::pair<size_type, size_type>
1245 set(
const std::vector<size_type> & indices,
1247 const bool elide_zero_values =
false);
1255 set(
const std::vector<size_type> & row_indices,
1256 const std::vector<size_type> & col_indices,
1258 const bool elide_zero_values =
false);
1289 const std::vector<size_type> & col_indices,
1290 const std::vector<TrilinosScalar> &values,
1291 const bool elide_zero_values =
false);
1320 template <
typename Number>
1325 const Number * values,
1326 const bool elide_zero_values =
false);
1359 add(
const std::vector<size_type> & indices,
1361 const bool elide_zero_values =
true);
1369 add(
const std::vector<size_type> & row_indices,
1370 const std::vector<size_type> & col_indices,
1372 const bool elide_zero_values =
true);
1389 const std::vector<size_type> & col_indices,
1390 const std::vector<TrilinosScalar> &values,
1391 const bool elide_zero_values =
true);
1410 const TrilinosScalar *values,
1411 const bool elide_zero_values =
true,
1412 const bool col_indices_are_sorted =
false);
1492 clear_rows(
const std::vector<size_type> &rows,
1493 const TrilinosScalar new_diag_value = 0);
1588 template <
typename VectorType>
1589 typename std::enable_if<std::is_same<
typename VectorType::value_type,
1590 TrilinosScalar>::value>::type
1591 vmult(VectorType &dst,
const VectorType &src)
const;
1599 template <
typename VectorType>
1600 typename std::enable_if<!std::is_same<
typename VectorType::value_type,
1601 TrilinosScalar>::value>::type
1602 vmult(VectorType &dst,
const VectorType &src)
const;
1618 template <
typename VectorType>
1619 typename std::enable_if<std::is_same<
typename VectorType::value_type,
1620 TrilinosScalar>::value>::type
1621 Tvmult(VectorType &dst,
const VectorType &src)
const;
1629 template <
typename VectorType>
1630 typename std::enable_if<!std::is_same<
typename VectorType::value_type,
1631 TrilinosScalar>::value>::type
1632 Tvmult(VectorType &dst,
const VectorType &src)
const;
1643 template <
typename VectorType>
1645 vmult_add(VectorType &dst,
const VectorType &src)
const;
1657 template <
typename VectorType>
1659 Tvmult_add(VectorType &dst,
const VectorType &src)
const;
1813 const Epetra_CrsMatrix &
1820 const Epetra_CrsGraph &
2015 print(std::ostream &out,
2016 const bool write_extended_trilinos_info =
false)
const;
2029 <<
"An error with error number " << arg1
2030 <<
" occurred while calling a Trilinos function");
2038 <<
"The entry with index <" << arg1 <<
',' << arg2
2039 <<
"> does not exist.");
2045 "You are attempting an operation on two matrices that "
2046 "are the same object, but the operation requires that the "
2047 "two objects are in fact different.");
2062 <<
"You tried to access element (" << arg1 <<
"/" << arg2
2064 <<
" of a distributed matrix, but only rows " << arg3
2065 <<
" through " << arg4
2066 <<
" are stored locally and can be accessed.");
2074 <<
"You tried to access element (" << arg1 <<
"/" << arg2
2076 <<
" of a sparse matrix, but it appears to not"
2077 <<
" exist in the Trilinos sparsity pattern.");
2166 check_vector_map_equality(
const Epetra_CrsMatrix & mtrx,
2167 const Epetra_MultiVector &src,
2168 const Epetra_MultiVector &dst,
2173 Assert(src.Map().SameAs(mtrx.DomainMap()) ==
true,
2175 "Column map of matrix does not fit with vector map!"));
2176 Assert(dst.Map().SameAs(mtrx.RangeMap()) ==
true,
2177 ExcMessage(
"Row map of matrix does not fit with vector map!"));
2181 Assert(src.Map().SameAs(mtrx.RangeMap()) ==
true,
2183 "Column map of matrix does not fit with vector map!"));
2184 Assert(dst.Map().SameAs(mtrx.DomainMap()) ==
true,
2185 ExcMessage(
"Row map of matrix does not fit with vector map!"));
2193 check_vector_map_equality(
const Epetra_Operator & op,
2194 const Epetra_MultiVector &src,
2195 const Epetra_MultiVector &dst,
2200 Assert(src.Map().SameAs(op.OperatorDomainMap()) ==
true,
2202 "Column map of operator does not fit with vector map!"));
2203 Assert(dst.Map().SameAs(op.OperatorRangeMap()) ==
true,
2205 "Row map of operator does not fit with vector map!"));
2209 Assert(src.Map().SameAs(op.OperatorRangeMap()) ==
true,
2211 "Column map of operator does not fit with vector map!"));
2212 Assert(dst.Map().SameAs(op.OperatorDomainMap()) ==
true,
2214 "Row map of operator does not fit with vector map!"));
2221 namespace LinearOperatorImplementation
2349 template <
typename Solver,
typename Preconditioner>
2350 typename std::enable_if<
2351 std::is_base_of<TrilinosWrappers::SolverBase, Solver>::value &&
2353 Preconditioner>::value,
2374 template <
typename Solver,
typename Preconditioner>
2375 typename std::enable_if<
2376 !(std::is_base_of<TrilinosWrappers::SolverBase, Solver>::value &&
2378 Preconditioner>::value),
2539 virtual const char *
2540 Label()
const override;
2549 virtual const Epetra_Comm &
2550 Comm()
const override;
2559 virtual const Epetra_Map &
2570 virtual const Epetra_Map &
2585 # ifdef DEAL_II_WITH_MPI
2658 visit_present_row();
2663 AccessorBase::row()
const
2671 AccessorBase::column()
const
2674 return (*colnum_cache)[a_index];
2679 AccessorBase::index()
const
2686 inline Accessor<true>::Accessor(MatrixType * matrix,
2693 template <
bool Other>
2694 inline Accessor<true>::Accessor(
const Accessor<Other> &other)
2695 : AccessorBase(other)
2699 inline TrilinosScalar
2700 Accessor<true>::value()
const
2703 return (*value_cache)[a_index];
2707 inline Accessor<false>::Reference::Reference(
const Accessor<false> &acc)
2708 : accessor(const_cast<Accessor<false> &>(acc))
2712 inline Accessor<false>::Reference::operator TrilinosScalar()
const
2714 return (*accessor.value_cache)[accessor.a_index];
2717 inline const Accessor<false>::Reference &
2718 Accessor<false>::Reference::operator=(
const TrilinosScalar n)
const
2720 (*accessor.value_cache)[accessor.a_index] = n;
2721 accessor.matrix->set(accessor.row(),
2723 static_cast<TrilinosScalar>(*
this));
2728 inline const Accessor<false>::Reference &
2729 Accessor<false>::Reference::operator+=(
const TrilinosScalar n)
const
2731 (*accessor.value_cache)[accessor.a_index] += n;
2732 accessor.matrix->set(accessor.row(),
2734 static_cast<TrilinosScalar>(*
this));
2739 inline const Accessor<false>::Reference &
2740 Accessor<false>::Reference::operator-=(
const TrilinosScalar n)
const
2742 (*accessor.value_cache)[accessor.a_index] -= n;
2743 accessor.matrix->set(accessor.row(),
2745 static_cast<TrilinosScalar>(*
this));
2750 inline const Accessor<false>::Reference &
2751 Accessor<false>::Reference::operator*=(
const TrilinosScalar n)
const
2753 (*accessor.value_cache)[accessor.a_index] *= n;
2754 accessor.matrix->set(accessor.row(),
2756 static_cast<TrilinosScalar>(*
this));
2761 inline const Accessor<false>::Reference &
2762 Accessor<false>::Reference::operator/=(
const TrilinosScalar n)
const
2764 (*accessor.value_cache)[accessor.a_index] /= n;
2765 accessor.matrix->set(accessor.row(),
2767 static_cast<TrilinosScalar>(*
this));
2772 inline Accessor<false>::Accessor(MatrixType * matrix,
2775 : AccessorBase(
matrix, row, index)
2779 inline Accessor<false>::Reference
2780 Accessor<false>::value()
const
2788 template <
bool Constness>
2789 inline Iterator<Constness>::Iterator(MatrixType * matrix,
2792 : accessor(
matrix, row, index)
2796 template <
bool Constness>
2797 template <
bool Other>
2798 inline Iterator<Constness>::Iterator(
const Iterator<Other> &other)
2799 : accessor(other.accessor)
2803 template <
bool Constness>
2804 inline Iterator<Constness> &
2805 Iterator<Constness>::operator++()
2815 if (accessor.a_index >= accessor.colnum_cache->size())
2817 accessor.a_index = 0;
2820 while ((accessor.a_row < accessor.matrix->m()) &&
2821 ((accessor.matrix->in_local_range(accessor.a_row) ==
false) ||
2822 (accessor.matrix->row_length(accessor.a_row) == 0)))
2825 accessor.visit_present_row();
2831 template <
bool Constness>
2832 inline Iterator<Constness>
2833 Iterator<Constness>::operator++(
int)
2835 const Iterator<Constness> old_state = *
this;
2842 template <
bool Constness>
2850 template <
bool Constness>
2851 inline const Accessor<Constness> *Iterator<Constness>::operator->()
const
2858 template <
bool Constness>
2862 return (accessor.a_row == other.accessor.a_row &&
2863 accessor.a_index == other.accessor.a_index);
2868 template <
bool Constness>
2872 return !(*
this == other);
2877 template <
bool Constness>
2881 return (accessor.row() < other.accessor.row() ||
2882 (accessor.row() == other.accessor.row() &&
2883 accessor.index() < other.accessor.index()));
2887 template <
bool Constness>
2891 return (other < *
this);
2909 return const_iterator(
this, m(), 0);
2918 if (in_local_range(r) && (row_length(r) > 0))
2919 return const_iterator(
this, r, 0);
2935 if (in_local_range(i) && (row_length(i) > 0))
2936 return const_iterator(
this, i, 0);
2956 return iterator(
this, m(), 0);
2965 if (in_local_range(r) && (row_length(r) > 0))
2966 return iterator(
this, r, 0);
2982 if (in_local_range(i) && (row_length(i) > 0))
2983 return iterator(
this, i, 0);
2995 TrilinosWrappers::types::int_type begin, end;
2996 # ifndef DEAL_II_WITH_64BIT_INDICES
2997 begin =
matrix->RowMap().MinMyGID();
2998 end =
matrix->RowMap().MaxMyGID() + 1;
3000 begin =
matrix->RowMap().MinMyGID64();
3001 end =
matrix->RowMap().MaxMyGID64() + 1;
3004 return ((index >= static_cast<size_type>(begin)) &&
3005 (index < static_cast<size_type>(end)));
3023 SparseMatrix::set<TrilinosScalar>(
const size_type row,
3026 const TrilinosScalar *values,
3027 const bool elide_zero_values);
3031 template <
typename Number>
3036 const Number * values,
3037 const bool elide_zero_values)
3039 std::vector<TrilinosScalar> trilinos_values(n_cols);
3040 std::copy(values, values + n_cols, trilinos_values.begin());
3042 row, n_cols, col_indices, trilinos_values.data(), elide_zero_values);
3050 const TrilinosScalar value)
3054 set(i, 1, &j, &value,
false);
3062 const bool elide_zero_values)
3064 Assert(indices.size() == values.
m(),
3068 for (
size_type i = 0; i < indices.size(); ++i)
3081 const TrilinosScalar value)
3093 if (last_action == Insert)
3096 ierr =
matrix->GlobalAssemble(*column_space_map,
3109 add(i, 1, &j, &value,
false);
3119 # ifndef DEAL_II_WITH_64BIT_INDICES
3120 return matrix->NumGlobalRows();
3122 return matrix->NumGlobalRows64();
3135 # ifndef DEAL_II_WITH_64BIT_INDICES
3136 return column_space_map->NumGlobalElements();
3138 return column_space_map->NumGlobalElements64();
3147 return matrix->NumMyRows();
3152 inline std::pair<SparseMatrix::size_type, SparseMatrix::size_type>
3156 # ifndef DEAL_II_WITH_64BIT_INDICES
3157 begin =
matrix->RowMap().MinMyGID();
3158 end =
matrix->RowMap().MaxMyGID() + 1;
3160 begin =
matrix->RowMap().MinMyGID64();
3161 end =
matrix->RowMap().MaxMyGID64() + 1;
3164 return std::make_pair(begin, end);
3172 # ifndef DEAL_II_WITH_64BIT_INDICES
3173 return matrix->NumGlobalNonzeros();
3175 return matrix->NumGlobalNonzeros64();
3181 template <
typename SparsityPatternType>
3184 const SparsityPatternType &sparsity_pattern,
3185 const MPI_Comm & communicator,
3186 const bool exchange_data)
3188 reinit(parallel_partitioning,
3189 parallel_partitioning,
3197 template <
typename number>
3200 const ::SparseMatrix<number> &sparse_matrix,
3201 const MPI_Comm & communicator,
3202 const double drop_tolerance,
3203 const bool copy_values,
3204 const ::SparsityPattern * use_this_sparsity)
3208 reinit(parallel_partitioning,
3209 parallel_partitioning,
3218 inline const Epetra_CrsMatrix &
3221 return static_cast<const Epetra_CrsMatrix &>(*matrix);
3226 inline const Epetra_CrsGraph &
3267 namespace LinearOperatorImplementation
3269 template <
typename Solver,
typename Preconditioner>
3270 typename std::enable_if<
3271 std::is_base_of<TrilinosWrappers::SolverBase, Solver>::value &&
3273 Preconditioner>::value,
3274 TrilinosPayload>::type
3275 TrilinosPayload::inverse_payload(
3277 const Preconditioner &preconditioner)
const
3279 const auto &payload = *
this;
3281 TrilinosPayload return_op(payload);
3285 return_op.inv_vmult = [payload, &solver, &preconditioner](
3286 TrilinosPayload::Domain & tril_dst,
3287 const TrilinosPayload::Range &tril_src) {
3290 Assert(&tril_src != &tril_dst,
3292 internal::check_vector_map_equality(payload,
3295 !payload.UseTranspose());
3296 solver.solve(payload, tril_dst, tril_src, preconditioner);
3299 return_op.inv_Tvmult = [payload, &solver, &preconditioner](
3300 TrilinosPayload::Range & tril_dst,
3301 const TrilinosPayload::Domain &tril_src) {
3304 Assert(&tril_src != &tril_dst,
3306 internal::check_vector_map_equality(payload,
3309 payload.UseTranspose());
3311 const_cast<TrilinosPayload &>(payload).transpose();
3312 solver.solve(payload, tril_dst, tril_src, preconditioner);
3313 const_cast<TrilinosPayload &>(payload).transpose();
3318 if (return_op.UseTranspose() ==
true)
3319 std::swap(return_op.inv_vmult, return_op.inv_Tvmult);
3324 template <
typename Solver,
typename Preconditioner>
3325 typename std::enable_if<
3326 !(std::is_base_of<TrilinosWrappers::SolverBase, Solver>::value &&
3328 Preconditioner>::value),
3329 TrilinosPayload>::type
3330 TrilinosPayload::inverse_payload(
Solver &,
const Preconditioner &)
const
3332 TrilinosPayload return_op(*
this);
3334 return_op.inv_vmult = [](TrilinosPayload::Domain &,
3335 const TrilinosPayload::Range &) {
3337 ExcMessage(
"Payload inv_vmult disabled because of "
3338 "incompatible solver/preconditioner choice."));
3341 return_op.inv_Tvmult = [](TrilinosPayload::Range &,
3342 const TrilinosPayload::Domain &) {
3344 ExcMessage(
"Payload inv_vmult disabled because of "
3345 "incompatible solver/preconditioner choice."));
3355 SparseMatrix::set<TrilinosScalar>(
const size_type row,
3358 const TrilinosScalar *values,
3359 const bool elide_zero_values);
3365 DEAL_II_NAMESPACE_CLOSE
3368 # endif // DEAL_II_WITH_TRILINOS